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"Take these three items, some WD-40, a vise grip, and a roll of duct tape. Any man worth his salt can fix almost any problem with this stuff alone." - Walt Kowalski
"Only two things are infinite - the universe, and human stupidity. And I'm not sure about the universe." - Albert Einstein
Does the guitar have a trem? If so, given that you are likely to swap tunings, it probably makes sense to immobilise it. Remove the cover from the back of the cavity, make sure there are five springs in and tighten the trem claw to pull the bridge plate down firmly on the top of the guitar.
Next re-string the guitar with your preferred gauge of string and tune to pitch.
Check the neck relief by placing a capo at the first fret and holding the bottom string down where the neck meets the body. You are looking for a gap between the bottom of the bottom E string and the top of the 7th/8th fret of around 10-15 thousands of an inch. With big strings, I would aim towards the upper end of the range. If relief is greater than this (which it may well be with heavier strings), tighten the truss rod (turn it clockwise). An eighth of a turn at a time is sensible, then recheck.
Then set the action by (most probably) raising the bridge saddles. You don't need a crazily high action for slide and again, you may well want to retain the option of fretting chords. A couple of millimetres at the twelfth fret is a reasonable level on the top string.
Once you are happy with the action, set the intonation using an electronic tuner, holding the guitar in its playing position. The fretted note at the twelfth fret should be the same pitch as the harmonic at the twelfth fret. If the fretted note is sharp, you need to adjust the saddle backwards, if the fretted note is flat, you need to shorten the string length by adjusting the saddle forwards towards the neck.
Once this is done, adjust the pick-up heights (fretted at the last fret I recommend a gap of about an eight of an inch on the bass side and slightly less on the treble - you may want to go closer with the bridge pick-up).
Make sure you use the right tools - in particular Allen (or 'hex') keys MUST fit properly, to avoid chewing things up. Likewise cross-head screw drivers.
Summarising how to do a full set up in one post isn't that straight-forward. I hope this is sufficient to get the guitar sorted out for your needs.
11s are likely to fit without needing the nut working. Or you could skip the issue altogether and try one of those slip-over nut things meant for slide. like this
Could make a wooden wedge to lock the trem, save playing with springs etc and keeps your current setting intact.